Coarse-Grained Models

Multiscale pi-pi (Mpipi) model: Residue-resolution CG model for studying phase behavior of proteins and RNA || Code and data 

Single interaction site (SIS) RNA model in LAMMPS: One bead per nucleic acid model for RNA LAMMPS implementation || Code and data

Mpipi-T: Residue residue CG model for studying thermoresponsive phase behavior of disordered proteins || Code and data 

MinimAl models for Prediction of small-molecule Partitioning into biomolecular condensateS (MAPPS) || Code and data

Other Simulation Datasets 

Phase diagrams of low-complexity domains (~146 phase diagrams) || Code and data

Network analysis of protein condensates || Code and data

Coarse-grained simulations of viral RNA condensates || Code and data

 

Useful Scripts 

Generate LAMMPS structure file for Mpipi model || Code